Bibliography#

This file consist of a complete bibliography for this book sorted alphabetically

Fre12

The Tyranny of Stuctureless. January 2012. [Online; accessed 19. May 2022]. URL: https://www.jofreeman.com/joreen/tyranny.htm.

eli20

Dec 2020. URL: https://elifesciences.org/for-the-press/a4dc2f54/elife-shifting-to-exclusively-reviewing-preprints.

ukr21

Aug 2021. URL: https://www.ukri.org/news/ukri-announces-new-open-access-policy/.

ACdK+19

Peter M. Abuja, Tamara Carapina, Martin de Kort, Michael Raess, Chris Tieken, and Nigel Wagstaff. Academia - industry collaboration best practices guide. 2019. URL: https://eatris.eu/wp-content/uploads/2019/12/CORBEL_Academia_Industry_Collaboration_Best_Practices_Guide.pdf, doi:10.5281/zenodo.2615365.

Age20

Norwegian Digitalisation Agency. Norwegian Licence for Open Government Data (NLOD) 2.0. Aug 2020. [Online; accessed 19. Nov. 2020]. URL: https://data.norge.no/nlod/en/2.0.

Ana20

Inc. Anaconda. 2020 state of data science. 2020. URL: https://know.anaconda.com/rs/387-XNW-688/images/Anaconda-SODS-Report-2020-Final.pdf.

AKA+22

Andrey Andreev, Valerie Komatsu, Paula Almiron, Kasey Rose, Alexandria Hughes, and Maurice Y Lee. Welcome to the lab. eLife, May 2022. URL: https://doi.org/10.7554/elife.79627, doi:10.7554/elife.79627.

Bak16

Monya Baker. Reproducibility crisis? Nature, 533(26):353–66, 2016.

Bal20

Alex Ball. How to License Research Data - DCC. Nov 2020. [Online; accessed 19. Nov. 2020]. URL: https://www.dcc.ac.uk/guidance/how-guides/license-research-data.

Bar18

Lorena A. Barba. Terminologies for Reproducible Research. arXiv, Feb 2018. URL: https://arxiv.org/abs/1802.03311v1, arXiv:1802.03311.

BE12

C. Glenn Begley and Lee M. Ellis. Raise standards for preclinical cancer research. Nature, 483(7391):531–533, Mar 2012. doi:10.1038/483531a.

BI15

C. Glenn Begley and John P. A. Ioannidis. Reproducibility in Science. Circ. Res., Jan 2015. URL: https://www.ahajournals.org/doi/10.1161/CIRCRESAHA.114.303819.

BZG+15a

Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raul Palma, Eleni Mina, Oscar Corcho, Jos\ifmmode \acute e\else é\fi  Manuel G\ifmmode \acute o\else ó\fi mez-P\ifmmode \acute e\else é\fi rez, Sean Bechhofer, and others. Using a suite of ontologies for preserving workflow-centric research objects. Journal of Web Semantics, 32:16–42, May 2015. doi:10.1016/j.websem.2015.01.003.

BZG+15b

Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raul Palma, Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean Bechhofer, Graham Klyne, and Carole Goble. Using a suite of ontologies for preserving workflow-centric research objects. Journal of Web Semantics, 32:16–42, 2015. URL: https://www.sciencedirect.com/science/article/pii/S1570826815000049, doi:https://doi.org/10.1016/j.websem.2015.01.003.

Bir21

Abeba Birhane. Algorithmic injustice: a relational ethics approach. Patterns, 2(2):100205, 2021. URL: https://www.sciencedirect.com/science/article/pii/S2666389921000155.

BSorensen15

Carter Bloch and Mads P. Sørensen. The size of research funding: Trends and implications. Sci. Public Policy, 42(1):30–43, Feb 2015. doi:10.1093/scipol/scu019.

BSJS09

Elizabeth T. Borer, Eric W. Seabloom, Matthew B. Jones, and Mark Schildhauer. Some simple guidelines for effective data management. The Bulletin of the Ecological Society of America, 2009. URL: https://doi.org/10.1890/0012-9623-90.2.205, doi:10.1890/0012-9623-90.2.205.

BVG22

John Borghi and Ana Van Gulick. Promoting open science through research data management. Harvard Data Science Review, July 2022. URL: https://doi.org/10.1162/99608f92.9497f68e, doi:10.1162/99608f92.9497f68e.

BDC20

Amine Boulemtafes, Abdelouahid Derhab, and Yacine Challal. A review of privacy-preserving techniques for deep learning. Neurocomputing, 384:21–45, April 2020. doi:10.1016/j.neucom.2019.11.041.

BGLI+19

Giangiacomo Bravo, Francisco Grimaldo, Emilia López-Inesta, Bahar Mehmani, and Flaminio Squazzoni. The effect of publishing peer review reports on referee behavior in five scholarly journals. Nature Communications, 10(322):1–8, January 2019. URL: https://doi.org/10.1038/s41467-018-08250-2, doi:10.1038/s41467-018-08250-2.

BB17

William Bridges and Susan Bridges. Managing Transitions. John Murray Press, 2017. ISBN 9780738219653. URL: https://wmbridges.com/about/what-is-transition/.

bro17

adrienne maree brown. Emergent Strategy Shaping Change, Changing Worlds. Ak Press, 2017. ISBN 9781849352604. URL: https://www.akpress.org/emergentstrategy.html.

BLM+22

Hannah Brown, Katherine Lee, Fatemehsadat Mireshghallah, Reza Shokri, and Florian Tramèr. What Does it Mean for a Language Model to Preserve Privacy? arXiv:2202.05520 [cs, stat], February 2022. arXiv:2202.05520.

Bry15

Jenny Bryan. How to name files. May 2015. [Online; accessed 19. Nov. 2020]. URL: https://speakerdeck.com/jennybc/how-to-name-files.

Bur12

John Burnham. Developments in social grrraaacceeesss: visible–invisible and voiced–unvoiced. In Culture and reflexivity in systemic psychotherapy, pages 139–160. Routledge, 2012. URL: https://www.taylorfrancis.com/chapters/edit/10.4324/9780429473463-7/developments-social-grrraaacceeesss-visible%E2%80%93invisible-voiced%E2%80%93unvoiced-1-john-burnham.

CLE+19

Nicholas Carlini, Chang Liu, Úlfar Erlingsson, Jernej Kos, and Dawn Song. The secret Sharer: Evaluating and testing unintended memorization in neural networks. In Proceedings of the 28th USENIX Security Symposium, 267–284. USENIX Association, February 2019. arXiv:1802.08232.

CRKR19

Evan W. Carr, Andrew Reece, Gabriella Rosen Kellerman, and Alexi Robichaux. The Value of Belonging at Work. Dec 2019. [Online; accessed 19. Nov. 2020]. URL: https://hbr.org/2019/12/the-value-of-belonging-at-work.

Cha21

Elodie Chabrol. Practical tips for scientists using twitter, in A comprehensive guide to science communication. Apr 2021. URL: https://www.hindawi.com/resources/.

CB20

V. Bala Chaudhary and Asmeret Asefaw Berhe. Ten simple rules for building an antiracist lab. PLOS Computational Biology, 16(10):e1008210, October 2020. URL: https://doi.org/10.1371/journal.pcbi.1008210, doi:10.1371/journal.pcbi.1008210.

Cha18

Dalmeet Singh Chawla. Assigning authorship for research papers can be tricky. these approaches can help. December 2018. URL: https://www.science.org/content/article/assigning-authorship-research-papers-can-be-tricky-these-approaches-can-help (visited on 2023-04-06).

CHA+20

Veronika Cheplygina, Felienne Hermans, Casper Albers, Natalia Bielczyk, and Ionica Smeets. Ten simple rules for getting started on Twitter as a scientist. PLOS Computational Biology, 16(2):1–9, 2020. Publisher: Public Library of Science. URL: https://doi.org/10.1371/journal.pcbi.1007513, doi:10.1371/journal.pcbi.1007513.

CHKB+21

Neil P. Chue Hong, Daniel S. Katz, Michelle Barker, Anna-Lena Lamprecht, Carlos Martinez, Fotis E. Psomopoulos, Jen Harrow, Leyla Jael Castro, Morane Gruenpeter, Paula Andrea Martinez, and Tom Honeyman. Fair principles for research software (fair4rs principles). 2021. doi:10.15497/RDA00065.

CK92

Jon F. Claerbout and Martin Karrenbach. Electronic documents give reproducible research a new meaning. Jan 1992. [Online; accessed 27. May 2020]. URL: https://library.seg.org/doi/abs/10.1190/1.1822162, doi:https://doi.org/10.1190/1.1822162.

CNC18

Maximin Coavoux, Shashi Narayan, and Shay B Cohen. Privacy-preserving neural representations of text. In Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, 1–10. 2018.

Col90

Patricia Hill Collins. Black feminist thought in the matrix of domination. In Black feminist thought: Knowledge, consciousness, and the politics of empowerment. HarperCollins Academic, 1990. URL: http://www.oregoncampuscompact.org/uploads/1/3/0/4/13042698/patricia_hill_collins_black_feminist_thought_in_the_matrix_of_domination.pdf.

CWP18

Nicholas Colvard, Edward Watson, and Hyojin Park. The Impact of Open Educational Resources on Various Student Success Metrics. International Journal of Teaching and Learning in Higher Education, 30(2):262–276, 2018.

Com20a

Creative Commons. About CC Licenses - Creative Commons. May 2020. [Online; accessed 19. Nov. 2020]. URL: https://creativecommons.org/about/cclicenses.

Com20b

Open Data Commons. Licenses - Open Data Commons: legal tools for open data. Oct 2020. [Online; accessed 19. Nov. 2020]. URL: https://opendatacommons.org/licenses/index.html.

CC20

Sasha Costanza-Chock. Design justice: Community-led practices to build the worlds we need. The MIT Press, 2020. URL: https://design-justice.pubpub.org/.

Cow20

Wind Cowles. Research Guides: Research Data Management at Princeton: File naming and structure. Oct 2020. [Online; accessed 19. Nov. 2020]. URL: https://libguides.princeton.edu/c.php?g=102546&p=930626.

Cre89

Kimberlé Crenshaw. Demarginalizing the intersection of race and sex: a black feminist critique of antidiscrimination doctrine, feminist theory and antiracist politics. University of Chicago Legal Forum, pages 139, 1989. URL: https://chicagounbound.uchicago.edu/cgi/viewcontent.cgi?article=1052&context=uclf.

Cum20

Tucker Cummings. Does the Pomodoro Technique Work for Your Productivity? Apr 2020. URL: https://www.lifehack.org/articles/productivity/the-pomodoro-technique-is-it-right-for-you.html.

DignazioK20

Catherine D'ignazio and Lauren F Klein. Data feminism. MIT press, 2020. URL: https://mitpress.mit.edu/books/data-feminism.

DSKW20

Koenraad De Smedt, Dimitris Koureas, and Peter Wittenburg. Fair digital objects for science: from data pieces to actionable knowledge units. Publications, 2020. URL: https://www.mdpi.com/2304-6775/8/2/21, doi:10.3390/publications8020021.

dVWA+14

Rob B. M. de Vries, Kimberley E. Wever, Marc T. Avey, Martin L. Stephens, Emily S. Sena, and Marlies Leenaars. The Usefulness of Systematic Reviews of Animal Experiments for the Design of Preclinical and Clinical Studies. ILAR J., 55(3):427–437, Dec 2014. doi:10.1093/ilar/ilu043.

DMS11

Vincent Dessain, Olivier Meier, and Vicente Salas. Corporate Governance and Ethics: Shareholder Reality, Social Responsibility or Institutional Necessity? M@n@gement, 11(2):65–79, February 2011. URL: https://www.cairn.info/revue-management-2008-2-page-65.htm.

DL10

Ulrich Dirnagl and Martin Lauritzen. Fighting publication bias: introducing the negative results section. Journal of Cerebral Blood Flow & Metabolism, 30(7):1263–1264, 2010. PMID: 20596038. URL: https://doi.org/10.1038/jcbfm.2010.51, arXiv:https://doi.org/10.1038/jcbfm.2010.51, doi:10.1038/jcbfm.2010.51.

Dit22

Joel Dittmer. Applied ethics. Internet Encyclopedia of Philosophy, 2022. URL: https://iep.utm.edu/applied-ethics/.

Duk12

Monica Duke. How to Write a Lay Summary - DCC How-to Guides. Digital Curation Centre, June 2012. [Online; accessed 7. June. 2021]. URL: https://www.dcc.ac.uk/guidance/how-guides/write-lay-summary.

DT21

Patrick Dunleavy and Jane Tinkler. Maximizing the Impacts of Academic Research. Red Globe Press: London, Jan 2021. URL: https://www.amazon.co.uk/dp/B08KZLWB44/ref=dp-kindle-redirect?_encoding=UTF8&btkr=1.

FBDD20

Oluwaseyi Feyisetan, Borja Balle, Thomas Drake, and Tom Diethe. Privacy- And utility-preserving textual analysis via calibrated multivariate perturbations. In WSDM 2020 - Proceedings of the 13th International Conference on Web Search and Data Mining, 178–186. Association for Computing Machinery, Inc, October 2020. arXiv:1910.08902, doi:10.1145/3336191.3371856.

FW17

Eric A. Fong and Allen W. Wilhite. Authorship and citation manipulation in academic research. PLOS ONE, 12:1–34, 12 2017. URL: https://doi.org/10.1371/journal.pone.0187394, doi:10.1371/journal.pone.0187394.

fDCP21

Centers for Disease Control and Prevention. The u.s. public health service syphilis study at tuskegee timeline. 2021. URL: https://www.cdc.gov/tuskegee/timeline.htm.

Fox21

Charles W. Fox. Which peer reviewers voluntarily reveal their identity to authors? insights into the consequences of open-identities peer review. Proceedings Roayl Society B, 288:20211399, January 2021. URL: https://doi.org/10.1098/rspb.2021.1399, doi:10.1098/rspb.2021.1399.

FN10

Tove Faber Frandsen and Jeppe Nicolaisen. What is in a name? credit assignment practices in different disciplines. Journal of Informetrics, 4(4):608–617, October 2010. URL: https://doi.org/10.1016/j.joi.2010.06.010, doi:10.1016/j.joi.2010.06.010.

FC18

Juliana Freire and Fernando Seabra Chirigati. Provenance and the different flavors of reproducibility. IEEE Data Eng. Bull., 41(1):15–26, 2018. URL: http://sites.computer.org/debull/A18mar/p15.pdf.

FK18

Siiri Fuchs and Mari Elisa Kuusniemi. Making a research project understandable - Guide for data documentation. Zenodo, Dec 2018. doi:10.5281/zenodo.1914401.

GBB+20

Leyla Garcia, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, and Patricia M. Palagi. Ten simple rules for making training materials fair. PLOS Computational Biology, 16(5):1–9, 05 2020. URL: https://doi.org/10.1371/journal.pcbi.1007854, doi:10.1371/journal.pcbi.1007854.

GSGPP+19

Andres Garcia-Silva, Jose Manuel Gomez-Perez, Raul Palma, Marcin Krystek, Simone Mantovani, Federica Foglini, Valentina Grande, Francesco De Leo, Stefano Salvi, Elisa Trasatti, Vito Romaniello, Mirko Albani, Cristiano Silvagni, Rosemarie Leone, Fulvio Marelli, Sergio Albani, Michele Lazzarini, Hazel J. Napier, Helen M. Glaves, Timothy Aldridge, Charles Meertens, Fran Boler, Henry W. Loescher, Christine Laney, Melissa A. Genazzio, Daniel Crawl, and Ilkay Altintas. Enabling fair research in earth science through research objects. Future Generation Computer Systems, 98:550–564, 2019. URL: https://www.sciencedirect.com/science/article/pii/S0167739X18314638, doi:https://doi.org/10.1016/j.future.2019.03.046.

GMV+18

Timnit Gebru, Jamie Morgenstern, Briana Vecchione, Jennifer Wortman Vaughan, Hanna Wallach, Hal Daumé III, and Kate Crawford. Datasheets for datasets. arXiv preprint arXiv:1803.09010, 2018. URL: https://www.microsoft.com/en-us/research/uploads/prod/2019/01/1803.09010.pdf.

GTL07

Robert Gentleman and Duncan Temple Lang. Statistical Analyses and Reproducible Research. J. Comput. Graph. Stat., 16(1):1–23, Mar 2007. doi:10.1198/106186007X178663.

GD20

Sarah Goff-Dupont. How to be a successful project owner (without micromanaging). Work Life by Atlassian, Aug 2020. URL: https://www.atlassian.com/blog/productivity/guide-to-project-ownership-without-micromanaging.

GAA+21

Sarah Greene, Gwen Antell, Jake Atterby, Rehemat Bhatia, Emma Dunne, Sam Giles, Sebastian Groh, Emma Hanson, Jason Hilton, Hazel Knight, Peter Kraftl, Esme Morgan, Isobel Rhodes, Francisca Rockey, Shivani Singh, Carl Stevenson, Simiao Sun, Bridget Warren, James Wheeley, and Kweku Yamoah. Safety and belonging in the field: a checklist for educators. EarthArxiv, August 2021. URL: https://doi.org/10.31223/x53p6h, doi:10.31223/x53p6h.

Har88

Donna Haraway. Situated knowledges: the science question in feminism and the privilege of partial perspective. Feminist studies, 14(3):575–599, 1988. URL: https://www.jstor.org/stable/3178066.

Har18

L. A. Harvey. Gift, honorary or guest authorship. Spinal Cord, 56(2):91, Feb 2018. doi:10.1038/s41393-017-0057-8.

HCH+15

Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, and Thanassis Tiropanis. How should individual participant data (IPD) from publicly funded clinical trials be shared? BMC Medicine, 13(298):1–7, 2015. doi:10.1186/s12916-015-0532-z.

Hen21

Teague R. Henry. Data management for researchers: 8 principles of good data management. Open Science Framework, 2021. URL: https://doi.org/10.31234/osf.io/5tmfe, doi:10.31234/osf.io/5tmfe.

HMC+21

Soleil Hernandez, Raymond Mumme, Laurence Court, Daniel El Basha, Skylar Gay, Barbara Marquez, Yao Xiao, Kai Huang, Hana Baroudi, Wenhua Cao, Carlos Cardenas, Raphael Douglas, Jack Duryea, Zaphanlene Kaffey, Deborah Mann, Kelly Nealon, Tucker Netheron, Callistus Nguyen, Kyuhak Oh, Adenike Olanrewaju, Carlos Sjogreen, DJ Rhee, Jinzhong Yang, Cenji Yu, Lifei Zhang, Yao Zhao, Hamid Ziyaee, and Mary Gronberg. Improving lab culture through self-assessment: a case study. bioRxiv, December 2021. URL: https://doi.org/10.1101/2021.12.08.471870, doi:10.1101/2021.12.08.471870.

HBP+18

Michael A. Heroux, Lorena Barba, Manish Parashar, Victoria Stodden, and Michela Taufer. Toward a Compatible Reproducibility Taxonomy for Computational and Computing Sciences. OSTI.GOV collections, Oct 2018. [Online; accessed 27. May 2020]. URL: https://www.osti.gov/biblio/1481626-toward-compatible-reproducibility-taxonomy-computational-computing-sciences, doi:10.2172/1481626.

Hod15

Amy Hodge. Best practices for file naming. 2015. [Online; accessed 19. Nov. 2020]. URL: https://library.stanford.edu/research/data-management-services/data-best-practices/best-practices-file-naming.

Hol20

Andrew Gary Darwin Holmes. Researcher positionality-a consideration of its influence and place in qualitative research-a new researcher guide. International Journal of Education, 8(4):1–10, 2020. URL: https://files.eric.ed.gov/fulltext/EJ1268044.pdf.

Hoo21

Daniel Hook. Feb 2021. URL: https://www.dimensions.ai/blog/open-access-surpasses-subscription-publication-globally-for-the-first-time/.

HRHW22

Serge P.J.M. Horbach, Tony Ross-Hellauer, and Ludo Waltman. Sunlight not shadows: double-anonymized peer review is not the progressive answer to status bias. Open Science Framework Preprint, pages 1–3, October 2022. URL: https://doi.org/10.31219/osf.io/fqb5c, doi:10.31219/osf.io/fqb5c.

Ioa05

John P. A. Ioannidis. Why most published research findings are false. PLOS Medicine, 2(8):null, 08 2005. URL: https://doi.org/10.1371/journal.pmed.0020124, doi:10.1371/journal.pmed.0020124.

IGH+14

John P. A. Ioannidis, Sander Greenland, Mark A. Hlatky, Muin J. Khoury, Malcolm R. Macleod, David Moher, Kenneth F. Schulz, and Robert Tibshirani. Increasing value and reducing waste in research design, conduct, and analysis. Lancet, 383(9912):166–175, Jan 2014. doi:10.1016/S0140-6736(13)62227-8.

IT18

Peter Ivie and Douglas Thain. Reproducibility in Scientific Computing. ACM Comput. Surv., 51(3):1–36, Jul 2018. doi:10.1145/3186266.

JM19

Danielle Jacobson and Nida Mustafa. Social identity map: a reflexivity tool for practicing explicit positionality in critical qualitative research. International Journal of Qualitative Methods, 18:1609406919870075, 2019. URL: https://journals.sagepub.com/doi/full/10.1177/1609406919870075.

Jaf18

Anisa JN Jafar. What is positionality and should it be expressed in quantitative studies? Emergency Medicine Journal, 2018. URL: https://emj.bmj.com/content/35/5/323, doi:10.1136/emermed-2017-207158.

JBK+19

Mijke Jetten, Boudewijn van den Berg, Mateusz Kuzak, Iza Witkowska, Lena Karvovskaya, Carlos Teijeiro Barjas, Ellen Leenarts, Fieke Schoots, Maria Cruz, Esther Plomp, Ellen Verbakel, Paula Martinez Lavanchy, Barteld Braaksma, Ruurd Schoonhoven, and Ingeborg Verheul. 23 Things: Support for Research Data. Updated version for the Dutch Community by the LCRDM task group RDA/23 Things. October 2019. URL: https://doi.org/10.5281/zenodo.3465896, doi:10.5281/zenodo.3465896.

JGM+21

Mijke Jetten, Marjan Grootveld, Annemie Mordant, Mascha Jansen, Margreet Bloemers, Margriet Miedema, and Celia W.G. van Gelder. Professionalising data stewardship in the Netherlands. Competences, training and education. Dutch roadmap towards national implementation of FAIR data stewardship. March 2021. URL: https://doi.org/10.5281/zenodo.4623713, doi:10.5281/zenodo.4623713.

KMA+19

Peter Kairouz, H. Brendan McMahan, Brendan Avent, Aurélien Bellet, Mehdi Bennis, Arjun Nitin Bhagoji, Keith Bonawitz, Zachary Charles, Graham Cormode, Rachel Cummings, Rafael G. L. D'Oliveira, Salim El Rouayheb, David Evans, Josh Gardner, Zachary Garrett, Adrià Gascón, Badih Ghazi, Phillip B. Gibbons, Marco Gruteser, Zaid Harchaoui, Chaoyang He, Lie He, Zhouyuan Huo, Ben Hutchinson, Justin Hsu, Martin Jaggi, Tara Javidi, Gauri Joshi, Mikhail Khodak, Jakub Konečný, Aleksandra Korolova, Farinaz Koushanfar, Sanmi Koyejo, Tancrède Lepoint, Yang Liu, Prateek Mittal, Mehryar Mohri, Richard Nock, Ayfer Özgür, Rasmus Pagh, Mariana Raykova, Hang Qi, Daniel Ramage, Ramesh Raskar, Dawn Song, Weikang Song, Sebastian U. Stich, Ziteng Sun, Ananda Theertha Suresh, Florian Tramèr, Praneeth Vepakomma, Jianyu Wang, Li Xiong, Zheng Xu, Qiang Yang, Felix X. Yu, Han Yu, and Sen Zhao. Advances and Open Problems in Federated Learning. arXiv:1912.04977 [cs], December 2019. arXiv:1912.04977.

KHSN09

Anelis Kaiser, Sven Haller, Sigrid Schmitz, and Cordula Nitsch. On sex/gender related similarities and differences in fMRI language research. Brain Res. Rev., 61(2):49–59, Oct 2009. doi:10.1016/j.brainresrev.2009.03.005.

KC21

Fani Kelesidou and Elodie Chabrol. A comprehensive guide to science communication. Hindawi Limited, Apr 2021. URL: https://www.hindawi.com/resources/.

KHA+22

Brianne A. Kent, Constance Holman, Emmanuella Amoako, Alberto Antonietti, James M. Azam, Hanne Ballhausen, Yaw Bediako, Anat M. Belasen, Clarissa F. D. Carneiro, Yen-Chung Chen, Ewoud B. Compeer, Chelsea A. C. Connor, Sophia Crüwell, Humberto Debat, Emma Dorris, Hedyeh Ebrahimi, Jeffrey C. Erlich, Florencia Fernández-Chiappe, Felix Fischer, Małgorzata Anna Gazda, Toivo Glatz, Peter Grabitz, Verena Heise, David G. Kent, Hung Lo, Gary McDowell, Devang Mehta, Wolf-Julian Neumann, Kleber Neves, Mark Patterson, Naomi C. Penfold, Sophie K. Piper, Iratxe Puebla, Peter K. Quashie, Carolina Paz Quezada, Julia L. Riley, Jessica L. Rohmann, Shyam Saladi, Benjamin Schwessinger, Bob Siegerink, Paulina Stehlik, Alexandra Tzilivaki, Kate D. L. Umbers, Aalok Varma, Kaivalya Walavalkar, Charlotte M. de Winde, Cecilia Zaza, and Tracey L. Weissgerber. Recommendations for empowering early career researchers to improve research culture and practice. PLoS Biology, 20(7):e3001680, 2022. URL: https://dx.plos.org/10.1371/journal.pbio.3001680, doi:10.1371/journal.pbio.3001680.

KPK+09

Carol Kilkenny, Nick Parsons, Ed Kadyszewski, Michael F. W. Festing, Innes C. Cuthill, Derek Fry, Jane Hutton, and Douglas G. Altman. Survey of the Quality of Experimental Design, Statistical Analysis and Reporting of Research Using Animals. PLoS One, 4(11):e7824, Nov 2009. doi:10.1371/journal.pone.0007824.

Kor06

Stanley G Korenman. Teaching the responsible conduct of research in humans (RCRH), chapter 1. Los Angeles: University of California, 2006. URL: https://ori.hhs.gov/education/products/ucla/default.htm.

Kot12

John P Kotter. Leading Change. Harvard Business Review Press, 2012. ISBN 9781422186435. URL: https://www.kotterinc.com/bookshelf/leading-change/.

KGL+20

Kevin Kunzmann, Michael J Grayling, Kim May Lee, David S Robertson, Kaspar Rufibach, and James Wason. A review of Bayesian perspectives on sample size derivation for confirmatory trials. arXiv preprint arXiv:2006.15715, 2020. URL: https://arxiv.org/abs/2006.15715.

Kuu10

Arja Kuula. Methodological and ethical dilemmas of archiving qualitative data. IASSIST Quarterly, 34(3-4):35, 2010. URL: https://iassistquarterly.com/public/pdfs/iqvol34_35_kuula.pdf.

Lab16

Mozilla Science Lab. Mozilla science labs study group. GitHub, 2016.

LW20

Jaron Lanier and E. Glen Weyl. Ai is an ideology, not a technology. 2020. URL: https://www.wired.com/story/opinion-ai-is-an-ideology-not-a-technology/.

LGM+21

Ryan J. Larsen, Borjan Gagoski, Sarah U. Morton, Yangming Ou, Rutvi Vyas, P. Ellen Litt, Jonathanand Grant, and Bradley P. Sutton. Dataset for "quantification of magnetic resonance spectroscopy data using a combined reference: application in typically developing infants. 2021. URL: https://doi.org/10.13012/B2IDB-3548139_V1, doi:10.13012/B2IDB-3548139_V1.

Len12

Patrick Lencioni. The Five Dysfunctions of a Team: Team Assessment. Pfeiffer, San Francisco, Calif, 2012. ISBN 978-1-118-12730-8. URL: https://www.worldcat.org/title/794274430.

LA18

Margaret C. Levenstein and Lyle Jared A. Data: sharing is caring. Advances in Methods and Practices in Psychological Science, 2018. URL: https://doi.org/10.1177/2515245918758319, doi:10.1177/2515245918758319.

LAW+17

Max Liboiron, Justine Ammendolia, Katharine Winsor, Alex Zahara, Hillary Bradshaw, Jessica Melvin, Charles Mather, Natalya Dawe, Emily Wells, France Liboiron, Bojan Furst, Coco Coyle, Jacquelyn Saturno, Melissa Novacefski, Sam Westscott, and Grandmother Liboiron. Equity in author order: a feminist laboratory's approach. Catalyst: Feminism, Theory, Technoscience, 3(2):1–17, October 2017. URL: https://doi.org/10.28968/cftt.v3i2.28850, doi:10.28968/cftt.v3i2.28850.

Low16

Derek Lowe. A field guide to authorship fraud. Science, 2016. URL: https://www.science.org/content/blog-post/field-guide-authorship-fraud.

Mae19

Fernando T. Maestre. Ten simple rules towards healthier research labs. PLOS Computational Biology, 15(4):e1006914, April 2019. URL: https://doi.org/10.1371/journal.pcbi.1006914, doi:10.1371/journal.pcbi.1006914.

MO16

Adam Marcus and Ivan Oransky. Why fake data when you can fake a scientist? Nautilus, 2016. URL: https://nautil.us/why-fake-data-when-you-can-fake-a-scientist-236220/.

MO18

Adam Marcus and Ivan Oransky. The data thugs. Science, 359:730–732, 2018. URL: https://www.science.org/doi/full/10.1126/science.359.6377.730.

Mar15

Florian Markowetz. Five selfish reasons to work reproducibly. Genome Biol., 16(1):1–4, Dec 2015. doi:10.1186/s13059-015-0850-7.

MBM18

Ben Marwick, Carl Boettiger, and Lincoln Mullen. Packaging data analytical work reproducibly using R (and friends). PeerJ Preprints, Mar 2018. doi:10.7287/peerj.preprints.3192v2.

Mar18

Loyola University Maryland. Why Ethics are Important in Data Science by Loyola University Maryland. Jun 2018. [Online; accessed 8. Jun. 2020]. URL: https://www.loyola.edu/academics/data-science/blog/2018/why-ethics-are-important-in-data-science.

McI88

Peggy McIntosh. White privilege: unpacking the invisible knapsack. 1988. URL: https://admin.artsci.washington.edu/sites/adming/files/unpacking-invisible-knapsack.pdf.

MBB+16

Erin C. McKiernan, Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin, Damon McDougall, Brian A. Nosek, Karthik Ram, Courtney K. Soderberg, Jeffrey R. Spies, Kaitlin Thaney, Andrew Updegrove, Kara H. Woo, and Tal Yarkoni. Point of View: How open science helps researchers succeed. eLife, Jul 2016. doi:10.7554/eLife.16800.

Mey18

Michelle Meyer. Practical Tips for Ethical Data Sharing. Advances in Methods and Practices in Psychological Science, 1(1):131––144, 2018. doi:10.1177/2515245917747656.

MNV+17

Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, and Mark Wilkinson. Cloudy, increasingly fair; revisiting the fair data guiding principles for the european open science cloud. Information Services & Use, 37:1–8, 02 2017. doi:10.3233/ISU-170824.

NCL+20

Myura Nagendran, Yang Chen, Christopher A. Lovejoy, Anthony C. Gordon, Matthieu Komorowski, Hugh Harvey, Eric J. Topol, John P. A. Ioannidis, Gary S. Collins, and Mahiben Maruthappu. Artificial intelligence versus clinicians: systematic review of design, reporting standards, and claims of deep learning studies. BMJ, 368:m689, Mar 2020. doi:10.1136/bmj.m689.

NS08

Arvind Narayanan and Vitaly Shmatikov. Robust de-anonymization of large sparse datasets. In Proceedings - IEEE Symposium on Security and Privacy, 111–125. 2008. doi:10.1109/SP.2008.33.

Nie13

Kaare M. Nielsen. Biosafety data as confidential business information. PLOS Biology, 11(3):1–6, 03 2013. URL: https://doi.org/10.1371/journal.pbio.1001499, doi:10.1371/journal.pbio.1001499.

NDZ+18

David Norris, Ulrich Dirnagl, Michael J. Zigmond, Katherine Thompson-Peer, and Tracy T. Chow. Health tips for research groups. Nature, 557(7705):302–304, May 2018. URL: https://doi.org/10.1038/d41586-018-05146-5, doi:10.1038/d41586-018-05146-5.

NKP+17

Daniel Nuest, Markus Konkol, Edzer Pebesma, Christian Kray, Marc Schutzeichel, Holger Przibytzin, and Joerg Lorenz. Opening the publication process with executable research compendia. D-Lib Magazine, Jan 2017. URL: https://doi.org/10.1045/january2017-nuest, doi:10.1045/january2017-nuest.

OtU13

Corporate. Directorate-General for Internal Policies Of the Union. Legal aspects of free and open source software : compilation of briefing notes. Publications Office of the European Union, Dec 2013. ISBN 978-92-823-4570-2. URL: https://op.europa.eu/en/publication-detail/-/publication/9875c278-5510-4091-b14a-3e8282cb73a4.

OMS12

Richard Owen, Phil Macnaghten, and Jack Stilgoe. Responsible research and innovation: From science in society to science for society, with society. Sci. Public Policy, 39(6):751–760, Dec 2012. doi:10.1093/scipol/scs093.

Pan21

Michaela Panter. Credit where credit is due: best practices for authroship attribution. 2021. [Online; accessed 11. Aug. 2021]. URL: https://www.aje.com/en/arc/ethics-manuscript-authorship/.

PAB+22

Alexandra C. Pike, Kathryn E. Atherton, Yannik Bauer, Ben M. Crittenden, Freek van Ede, Sam Hall-McMaster, Alexander H. von Lautz, Paul S. Muhle-Karbe, Alexandra M. Murray, Nicholas E. Myers, Frida Printzlau, Ilenia Salaris, Eelke Spaak, Lev Tankelevitch, Darinka Trubutschek, Dante Wasmuht, and MaryAnn P. Noonan. 10 simple rules for a supportive lab environment. Journal of Cognitive Neuroscience, 35(1):44–48, December 2022. URL: https://doi.org/10.1162/jocn_a_01928, doi:10.1162/jocn_a_01928.

PPL+18

H. Piwowar, J. Priem, V. Lariviere, J.P. Alperin, L. Matthias, B. Norlander, A. Farley, J. West, and S Haustein. The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles. PeerJ, 6:e4375, Feb 2018. doi:10.7717/peerj.4375.

Ple18

Hans E. Plesser. Reproducibility vs. Replicability: A Brief History of a Confused Terminology. Front. Neuroinf., Jan 2018. doi:10.3389/fninf.2017.00076.

PP08

C. MIRJAM VAN PRAAG and BERNARD M.S. VAN PRAAG. The benefits of being economics professor a (rather than z). Economica, 75(300):782–796, November 2008. URL: https://doi.org/10.1111/j.1468-0335.2007.00653.x, doi:10.1111/j.1468-0335.2007.00653.x.

Rea19

Sara Reardon. Pig brains kept alive outside body for hours after death. Nature, 568:283–284, 2019. URL: https://www.nature.com/articles/d41586-019-01216-4.

Ric17

Britta Ricker. Reflexivity, positionality and rigor in the context of big data research. In Thinking Big Data in Geography: New Regimes, New Research. University of Iowa Press, 2017. URL: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2911652.

Ril22

Matthias C. Rillig. Ten simple rules for how you can help make your lab a better place as a graduate student or postdoc. PLOS Computational Biology, 18(12):e1010673, December 2022. URL: https://doi.org/10.1371/journal.pcbi.1010673, doi:10.1371/journal.pcbi.1010673.

RHDS17

Tony Ross-Hellauer, Arvin Deppe, and Birgit Schmidt. Survey on open peer review: attitudes and experience amongst editors, authors and reviewers. PLoS ONE, 12(12):1–28, December 2017. URL: https://doi.org/10.1371/journal.pone.0189311, doi:10.1371/journal.pone.0189311.

RHS19

Jeffrey N. Rouder, Julia M. Haaf, and Hope K. Snyder. Minimizing mistakes in psychological science. Advances in Methods and Practices in Psychological Science, 2(1):3–11, January 2019. URL: https://doi.org/10.1177/2515245918801915, doi:10.1177/2515245918801915.

RGBMP22

Nidia Ruedas-Gracia, Crystal M. Botham, Amber R. Moore, and Courtney Pena. Ten simple rules for creating a sense of belonging in your research group. PLOS Computational Biology, 18(12):e1010688, December 2022. URL: https://doi.org/10.1371/journal.pcbi.1010688, doi:10.1371/journal.pcbi.1010688.

SJB+19

Salome Scholtens, Mijke Jetten, Jasmin Böhmer, Christine Staiger, Inge Slouwerhof, Marije van der Geest, and Celia W.G. van Gelder. Final report: Towards FAIR data steward as profession for the lifesciences. Report of a ZonMw funded collaborative approach built on existing expertise. October 2019. URL: https://doi.org/10.5281/zenodo.3474789, doi:10.5281/zenodo.3474789.

Sha20

Malvika Sharan. Open communities and promoting a culture of collaboration. Zenodo, Apr 2020. doi:10.5281/zenodo.3745008.

Sha21

Malvika Sharan. Can we reimagine FAIR for building communities in open science? Zenodo, Sep 2021. doi:10.5281/zenodo.5518163.

SOML22

Balint Stewart, Emily Oliver, and Louise McGrath-Lone. What is ‘research-ready’ data? 2022. URL: https://www.adruk.org/fileadmin/uploads/adruk/Documents/What_is_research_ready_data__A_roundtable_report_June_2022.pdf.

Sto14

Victoria Stodden. Edge.org. May 2014. [Online; accessed 27. May 2020]. URL: https://www.edge.org/response-detail/25340.

SBH+18

David Stuart, Grace Baynes, Iain Hrynaszkiewicz, Katie Allin, Dan Penny, Mithu Lucraft, and Mathias Astell. Whitepaper: Practical challenges for researchers in data sharing. figshare, Mar 2018. doi:10.6084/m9.figshare.5975011.v1.

SWZ12

Xiaoxun Sun, Hua Wang, and Yanchun Zhang. On the identity anonymization of high-dimensional rating data. In Concurrency Computation Practice and Experience, volume 24, 1108–1122. John Wiley & Sons, Ltd, July 2012. doi:10.1002/cpe.1724.

Tea20

Data Study Group Team. Data study group final report - roche. 2020. URL: https://www.turing.ac.uk/news/publications/data-study-group-final-report-roche, doi:http://doi.org/10.5281/zenodo.3876989.

TWJ+16

Jonathan P. Tennant, Francois Waldner, Damien C. Jacques, Paola Masuzzo, Lauren B. Collister, and Chris. H. J. Hartgerink. The academic, economic and societal impacts of Open Access: an evidence-based review. F1000Research, 5:632, Sep 2016. doi:10.12688/f1000research.8460.3.

TS09

Richard H. Thaler and Cass R. Sunstein. Nudge. February 2009. [Online; accessed 5. May 2021]. URL: https://www.penguinrandomhouse.com/books/304634/nudge-by-richard-h-thaler-and-cass-r-sunstein.

TFR20

Amirsina Torfi, Edward A. Fox, and Chandan K. Reddy. Differentially Private Synthetic Medical Data Generation using Convolutional GANs. arXiv:2012.11774 [cs], December 2020. arXiv:2012.11774.

TKM+16

Alexander C. Tsai, Brandon A. Kohrt, Lynn T. Matthews, Theresa S. Betancourt, Jooyoung K. Lee, Andrew V. Papachristos, Sheri D. Weiser, Marian Dworkin, Shari L.Petre, and Greg Wilson. Promises and pitfalls of data sharing in qualitative research. Social Science & Medicine, pages 191–198, July 2016. URL: http://dx.doi.org/10.1016/j.socscimed.2016.08.004, doi:10.1016/j.socscimed.2016.08.004.

TAAG+18

Ayesha I. T. Tulloch, Nancy Auerbach, Stephanie Avery-Gomm, Elisa Bayraktarov, Nathalie Butt, Chris R. Dickman, Glenn Ehmke, Diana O. Fisher, Hedley Grantham, Matthew H. Holden, Tyrone H. Lavery, Nicholas P. Leseberg, Miles Nicholls, James O’Connor, Leslie Roberson, Anita K. Smyth, Zoe Stone, Vivitskaia Tulloch, Eren Turak, Glenda M. Wardle, and James E. M. Watson. A decision tree for assessing the risks and benefits of publishing biodiversity data. Nature Ecology & Evolution, 2(8):1209–1217, August 2018. URL: https://doi.org/10.1038/s41559-018-0608-1, doi:10.1038/s41559-018-0608-1.

TvdVDT20

Yasemin Turkyilmaz-van der Velden, Nicolas Dintzner, and Marta Teperek. Reproducibility Starts from You Today. Patterns, 1(6):100099, Sep 2020. doi:10.1016/j.patter.2020.100099.

VN14

Richard Van Noorden. Online collaboration: scientists and the social network. Nature, 512:126–129, 08 2014. URL: https://www.nature.com/news/online-collaboration-scientists-and-the-social-network-1.15711, doi:10.1038/512126a.

VIR+19

Ingeborg Verheul, Imming, Melanie, Jacquelijn Ringersma, Annemie Mordant, Jan-Lucas van der Ploeg, and Martine Pronk. Data Stewardship on the map: A study of tasks and roles in Dutch research institutes. May 2019. URL: https://doi.org/10.5281/zenodo.2669150, doi:10.5281/zenodo.2669150.

Wic14

Hadley Wickham. Tidy data. Journal of Statistical Software, 2014. URL: https://doi.org/10.18637/jss.v059.i10, doi:10.18637/jss.v059.i10.

WDA+16

Mark D. Wilkinson, Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, Merc Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J. G. Gray, Paul Groth, Carole Goble, Jeffrey S. Grethe, Jaap Heringa, Peter A. C. t Hoen, Rob Hooft, Tobias Kuhn, Ruben Kok, Joost Kok, Scott J. Lusher, Maryann E. Martone, Albert Mons, Abel L. Packer, Bengt Persson, Philippe Rocca-Serra, Marco Roos, Rene van Schaik, Susanna-Assunta Sansone, Erik Schultes, Thierry Sengstag, Ted Slater, George Strawn, Morris A. Swertz, Mark Thompson, Johan van der Lei, Erik van Mulligen, Jan Velterop, Andra Waagmeester, Peter Wittenburg, Katherine Wolstencroft, Jun Zhao, and Barend Mons. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data, 3(160018):1–9, Mar 2016. doi:10.1038/sdata.2016.18.

WFFD11

Joseph S Wislar, Annette Flanagin, Phil B Fontanarosa, and Catherine D DeAngelis. Honorary and ghost authorship in high impact biomedical journals: a cross sectional survey. BMJ, 2011. URL: https://www.bmj.com/content/343/bmj.d6128, arXiv:https://www.bmj.com/content/343/bmj.d6128.full.pdf, doi:10.1136/bmj.d6128.

WPA+20

Louise Woodley, Catherine Pratt, Rachael Ainsworth, Eva Amsen, Arne Bakker, Stefanie Butland, Stephanie O Donnell, Naomi Penfold, Allen Pope, Tom Quigley, and Emmy Tsang. Using virtual events to facilitate community building: event formats. Zenodo, Jul 2020. doi:10.5281/zenodo.3934385.

Wor21

Cassandra Worthy. Change Enthusiasm How to Harness the Power of Emotion for Leadership and Success. Hay House Business, 2021. ISBN 9781401961770. URL: https://cassandraworthy.com/meeting-professionals/.

YZM+12

Yin Yang, Zhenjie Zhang, Gerome Miklau, Marianne Winslett, and Xiaokui Xiao. Differential privacy in data publication and analysis. In Proceedings of the 2012 ACM SIGMOD International Conference on Management of Data, SIGMOD '12, 601–606. New York, NY, USA, May 2012. Association for Computing Machinery. doi:10.1145/2213836.2213910.

ZLM18

Brian Hu Zhang, Blake Lemoine, and Margaret Mitchell. Mitigating Unwanted Biases with Adversarial Learning. In Proceedings of the 2018 AAAI/ACM Conference on AI, Ethics, and Society, AIES '18, 335–340. New York, NY, USA, December 2018. Association for Computing Machinery. doi:10/gftmfb.

Zol18

Kevin J. S. Zollman. The Credit Economy and the Economic Rationality of Science. Journal of Philosophy, 115(1):5–33, Feb 2018. doi:10.5840/jphil201811511.

DirectorateGfRaIEuropeanCommission11

Directorate-General for Research and Innovation (European Commission). European textbook on ethics in research. Publications Office of the European Union, Jan 2011. ISBN 978-92-79-17543-5. URL: https://op.europa.eu/en/publication-detail/-/publication/0f37f142-c333-40a8-90a7-bba25c314720/language-en.

OpenSCollaboration15

Open Science Collaboration. Estimating the reproducibility of psychological science. Science, 349(6251):aac4716, Aug 2015. doi:10.1126/science.aac4716.

WorldHOrganisation20

World Health Organisation. Events as they happen. Jul 2020. [Online; accessed 7. Jul. 2020]. URL: https://www.who.int/emergencies/diseases/novel-coronavirus-2019/events-as-they-happen.